A process-based numerical model of the mouth of the Columbia River (MCR) and estuary, Oregon and Washington, was applied to simulate hydrodynamic conditions for the time period of the Office of Naval Research-funded River and Inlets Dynamics (RIVET II) field experiment conducted between May 9 and June 15, 2013. The model application was constructed using Delft3D, an open-source software package used to solve the unsteady shallow water equations to simulate water motion due to tides, waves, wind, and buoyancy effects. This portion of the USGS data release describes the model application for this experiment and presents input files necessary to run the Delft3D model, as well as selected output from the model simulation.