<?xml version='1.0' encoding='UTF-8'?>
<metadata xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <idinfo>
    <citation>
      <citeinfo>
        <origin>KAYLA N. KEY</origin>
        <origin>GARTH A. LINDNER</origin>
        <pubdate>20240509</pubdate>
        <title>Niche model results predicting fundamentally suitable and unsuitable habitat for freshwater mussel concentrations in the Meramec Basin</title>
        <geoform>vector digital data</geoform>
        <pubinfo>
          <pubplace>Tennessee Tech University</pubplace>
          <publish>Kayla N. Key</publish>
        </pubinfo>
        <othercit>Key, K. N. 2019. A spatial assessment of the status and risks to mussel concentrations in the Meramec Drainage of Missouri. PhD Dissertation, Tennessee Technological University, Cookeville, Tennessee.</othercit>
        <onlink>https://doi.org/10.5066/P9MDNT7P</onlink>
      </citeinfo>
    </citation>
    <descript>
      <abstract>This layer represents fundamentally suitable and unsuitable habitat for freshwater mussels in the Meramec Basin as modeled by these authors on May 17, 2017 based on spatial data ranging from 1990 to 2014.

Identification of habitat characteristics associated with the presence of freshwater mussels is challenging but crucial for the conservation of this declining fauna.  Most mussel species are found in multi-species assemblages suggesting that physical factors influence presence similarly across species. In lotic environments, geomorphic and hydraulic characteristics appear to be important factors for predicting mussel presence. We used maximum entropy (MaxEnt) modeling to evaluate hydrogeomorphic variables associated with mussel presence at a riverscape-scale along 530 river km of the Meramec River basin, USA. Mussel locations were obtained from an existing multi-year dataset, and hydrogeographic variables were derived using high-resolution, open-source datasets of aerial imagery and topography. The following hydrogeomorphic variables were associated with mussel presence: lateral channel stability, low-flow surface water availability, presence of gravel bars, and stream power, but presence of gravel bars appeared to be the most important variable. Identification of suitable habitat was strongly influenced by the distance to gravel bars, suggesting mussels are found near gravel bars. A subset of the data not used in model development was used to validate the final model. The validation locations fell almost exclusively and disproportionately in habitats that the model identified as suitable, suggesting that we identified common habitat requirements for multiple mussel species. These findings can inform how resource managers allocate survey, monitoring, and conservation efforts.</abstract>
      <purpose>The layer represents areas of suitable and unsuitable habitat for freshwater mussels as predicted by the model. It was created to inform how resource managers allocate conservation efforts in the Meramac River drainage.</purpose>
    </descript>
    <timeperd>
      <timeinfo>
        <rngdates>
          <begdate>19900101</begdate>
          <enddate>20141231</enddate>
        </rngdates>
      </timeinfo>
      <current>See Supplemental Info</current>
    </timeperd>
    <status>
      <progress>Complete</progress>
      <update>None planned</update>
    </status>
    <spdom>
      <bounding>
        <westbc>-91.3157</westbc>
        <eastbc>-90.3311</eastbc>
        <northbc>38.5752</northbc>
        <southbc>37.8026</southbc>
      </bounding>
    </spdom>
    <keywords>
      <theme>
        <themekt>ISO 19115 Topic Category</themekt>
        <themekey>biota</themekey>
      </theme>
      <theme>
        <themekt>None</themekt>
        <themekey>freshwater mussels</themekey>
        <themekey>conservation planning</themekey>
        <themekey>unionids</themekey>
        <themekey>hydrogeomorphology</themekey>
        <themekey>MaxEnt</themekey>
        <themekey>riverscape</themekey>
      </theme>
      <theme>
        <themekt>USGS Metadata Identifier</themekt>
        <themekey>USGS:5fc926add34e4b9faad8a223</themekey>
      </theme>
      <place>
        <placekt>None</placekt>
        <placekey>Ozark</placekey>
        <placekey>Missouri</placekey>
        <placekey>Meramec</placekey>
      </place>
    </keywords>
    <accconst>None.  Please see 'Distribution Info' for details.</accconst>
    <useconst>None.  Users are advised to read the dataset's metadata thoroughly to understand appropriate use and data limitations.</useconst>
    <ptcontac>
      <cntinfo>
        <cntperp>
          <cntper>Kayla N. Key</cntper>
          <cntorg>West Tennessee River Basin Authority</cntorg>
        </cntperp>
        <cntpos>Environmental Consultant I</cntpos>
        <cntaddr>
          <addrtype>mailing and physical</addrtype>
          <address>3628 East End Drive</address>
          <city>Humboldt</city>
          <state>Tennessee</state>
          <postal>38343</postal>
        </cntaddr>
        <cntvoice>7316164557</cntvoice>
        <cntemail>Kayla.Key@tn.gov</cntemail>
      </cntinfo>
    </ptcontac>
  </idinfo>
  <dataqual>
    <attracc>
      <attraccr>Please see open access publication for details about quality assessment of the dataset (Key 2019). https://search.proquest.com/docview/2334215273?pq-origsite=gscholar&amp;fromopenview=true</attraccr>
    </attracc>
    <logic>The actual data are consistent with the details provided here. All values fall within expected ranges, and the data have been checked for duplication/omission. The integrity of the geospatial data has been assessed.</logic>
    <complete>The spatial data used to create this model ranged from 1990-2014. The data represent information only within the fixed geographic area (Meramec River drainage, see "Spatial Domain").</complete>
    <lineage>
      <srcinfo>
        <srccite>
          <citeinfo>
            <origin>KAYLA N. KEY</origin>
            <origin>GARTH A. LINDNER</origin>
            <pubdate>20170517</pubdate>
            <title>Bluff adjacency area (continuous) and bluff adjacency (binary) layers derived from 2012-2014 LiDAR</title>
            <geoform>raster digital data</geoform>
          </citeinfo>
        </srccite>
        <typesrc>Digital and/or Hardcopy</typesrc>
        <srctime>
          <timeinfo>
            <rngdates>
              <begdate>20120101</begdate>
              <enddate>20141231</enddate>
            </rngdates>
          </timeinfo>
          <srccurr>publication date</srccurr>
        </srctime>
        <srccitea>Bluff adjacency</srccitea>
        <srccontr>Bluff adjacency was used as an environmental variable in the MaxEnt model.</srccontr>
      </srcinfo>
      <srcinfo>
        <srccite>
          <citeinfo>
            <origin>KAYLA N. KEY</origin>
            <origin>GARTH A. LINDNER</origin>
            <pubdate>20170517</pubdate>
            <title>Stream power index (continuous) and stream power class (binary) layers derived from 2012-2014 LiDAR</title>
            <geoform>raster digital data</geoform>
          </citeinfo>
        </srccite>
        <typesrc>Digital and/or Hardcopy</typesrc>
        <srctime>
          <timeinfo>
            <rngdates>
              <begdate>20120101</begdate>
              <enddate>20141231</enddate>
            </rngdates>
          </timeinfo>
          <srccurr>publication date</srccurr>
        </srctime>
        <srccitea>Stream power</srccitea>
        <srccontr>Stream power was used as an environmental variable in the MaxEnt model.</srccontr>
      </srcinfo>
      <srcinfo>
        <srccite>
          <citeinfo>
            <origin>KAYLA N. KEY</origin>
            <origin>GARTH A. LINDNER</origin>
            <pubdate>20170517</pubdate>
            <title>Lateral channel stability layer derived from 1990 and 2007 Leaf-off Digital Ortho Quarter Quads (DOQQ) imagery</title>
            <geoform>raster digital data</geoform>
          </citeinfo>
        </srccite>
        <typesrc>Digital and/or Hardcopy</typesrc>
        <srctime>
          <timeinfo>
            <rngdates>
              <begdate>19900101</begdate>
              <enddate>20071231</enddate>
            </rngdates>
          </timeinfo>
          <srccurr>publication date</srccurr>
        </srctime>
        <srccitea>Lateral channel stability</srccitea>
        <srccontr>Lateral channel stability was used as an environmental variable in the MaxEnt model.</srccontr>
      </srcinfo>
      <srcinfo>
        <srccite>
          <citeinfo>
            <origin>KAYLA N. KEY</origin>
            <origin>GARTH A. LINDNER</origin>
            <pubdate>20170517</pubdate>
            <title>Gravel/pool class layer derived from 2012 and 2014 National Agriculture Imagery Program (NAIP) imagery</title>
            <geoform>raster digital data</geoform>
          </citeinfo>
        </srccite>
        <typesrc>Digital and/or Hardcopy</typesrc>
        <srctime>
          <timeinfo>
            <rngdates>
              <begdate>20120101</begdate>
              <enddate>20141231</enddate>
            </rngdates>
          </timeinfo>
          <srccurr>publication date</srccurr>
        </srctime>
        <srccitea>Gravel/pool class</srccitea>
        <srccontr>Gravel/pool class was used as an environmental variable in the MaxEnt model.</srccontr>
      </srcinfo>
      <srcinfo>
        <srccite>
          <citeinfo>
            <origin>KAYLA N. KEY</origin>
            <origin>GARTH A. LINDNER</origin>
            <pubdate>20170517</pubdate>
            <title>Gravel bar proximity (binary) and distance to gravel bar (continuous) layers derived from 2012 and 2014 NAIP imagery</title>
            <geoform>raster digital data</geoform>
          </citeinfo>
        </srccite>
        <typesrc>Digital and/or Hardcopy</typesrc>
        <srctime>
          <timeinfo>
            <rngdates>
              <begdate>20120101</begdate>
              <enddate>20141231</enddate>
            </rngdates>
          </timeinfo>
          <srccurr>publication date</srccurr>
        </srctime>
        <srccitea>Gravel bar proximity</srccitea>
        <srccontr>Gravel bar proximity was used as an environmental variable in the MaxEnt model.</srccontr>
      </srcinfo>
      <srcinfo>
        <srccite>
          <citeinfo>
            <origin>KAYLA N. KEY</origin>
            <origin>GARTH A. LINDNER</origin>
            <pubdate>20170517</pubdate>
            <title>Low water availability index (continuous) and low water availability class (binary) layers derived from 2012 NAIP imagery</title>
            <geoform>raster digital data</geoform>
          </citeinfo>
        </srccite>
        <typesrc>Digital and/or Hardcopy</typesrc>
        <srctime>
          <timeinfo>
            <sngdate>
              <caldate>20120101</caldate>
            </sngdate>
          </timeinfo>
          <srccurr>publication date</srccurr>
        </srctime>
        <srccitea>Low water availability</srccitea>
        <srccontr>Low water availability was used as an environmental variable in the MaxEnt model.</srccontr>
      </srcinfo>
      <srcinfo>
        <srccite>
          <citeinfo>
            <origin>STEPHEN E. MCMURRAY</origin>
            <pubdate>20140813</pubdate>
            <title>Point locations of mussels from the Missouri Department of Conservation mussel database</title>
            <edition>Access</edition>
            <geoform>application/service</geoform>
          </citeinfo>
        </srccite>
        <typesrc>Digital and/or Hardcopy</typesrc>
        <srctime>
          <timeinfo>
            <rngdates>
              <begdate>19940101</begdate>
              <enddate>20131231</enddate>
            </rngdates>
          </timeinfo>
          <srccurr>publication date</srccurr>
        </srctime>
        <srccitea>Mussel occurrence data</srccitea>
        <srccontr>Point locations of mussels were used as input for the MaxEnt model.</srccontr>
      </srcinfo>
      <procstep>
        <procdesc>Step-by-step instructions for deriving the hydrogeomorphic layers used in this model are located in the corresponding publication (Key 2019). 

The maximum entropy modeling method known as MaxEnt (Phillips 2006) was used to generate habitat models for mussel communities in the Meramec River basin.  This method uses presence-only data to find the probability distribution of maximum entropy (i.e., closest to uniform) given constraints of known locations and hydrogeomorphic variables relative to the spatial extent of the analysis (Raxworthy et al. 2007). Because MaxEnt does not require absence points, 10,000 pseudo-absence points were generated automatically.  MaxEnt generated a map showing predicted habitat suitability for each area of the landscape (given the spatial grain size) with values ranging from 0 to 1, where 0 is the most unsuitable and 1 is the most suitable habitat. A portion of mussel survey locations (n=42) were used in the MaxEnt model. All continuous hydrogeomorphic variables used in the final model were not highly correlated (r &lt; 0.75).   Run type was set to bootstrap to generate test data with 20% of the presence data, and random seed was chosen to randomize test data. Replicates were set to 50 and iterations set to 5000. All other settings in MaxEnt were set to default.  The models were built using 80% of the total amount of presence data used in the model (n=42) referred to as “training data,” to generate the algorithms relating the hydrogeomorphic variables to the habitat suitability of every parcel on the landscape. The remaining 20% of locations that were withheld from MaxEnt were used to test the model. 

All spatial analyses were performed in ArcGIS 10.5 and projected to NAD 1983 UTM Zone 15N (ESRI 2011). Due to computational limitations, we were not able to perform the image classification analysis on aerial imagery at 1 m. The finest resolution we were able to classify and process was 10 m. Therefore, all other layers were resampled to a 10-m resolution using majority setting on the resample tool in ArcMap, and the final product has a 10-m resolution.

The raw model results were converted to a binary map of suitable and unsuitable reaches using the equal test sensitivity and specificity logistic threshold of 0.45. Once reaches were delineated, a buffer of 40 m was used to separate suitable and unsuitable habitats to account for areas of transition. The buffer size selected represents the average length of transitional values of habitat suitability seen across the watershed between long, continuous reaches of high habitat suitability values versus low unsuitable habitat values. The portions of river highlighted as suitable habitat by this approach are measurable reaches of suitable habitat that also vary in length.  The length of these reaches depends on the continuity of stream characteristics and the relationship of mussel presence to those characteristics.</procdesc>
        <procdate>20170517</procdate>
        <proccont>
          <cntinfo>
            <cntperp>
              <cntper>Kayla N. Key</cntper>
              <cntorg>West Tennessee River Basin Authority</cntorg>
            </cntperp>
            <cntpos>Environmental Consultant I</cntpos>
            <cntaddr>
              <addrtype>mailing and physical</addrtype>
              <address>3628 East End Drive</address>
              <city>Humboldt</city>
              <state>Tennessee</state>
              <postal>38343</postal>
            </cntaddr>
            <cntvoice>7316164557</cntvoice>
            <cntemail>Kayla.Key@tn.gov</cntemail>
          </cntinfo>
        </proccont>
      </procstep>
    </lineage>
  </dataqual>
  <spdoinfo>
    <direct>Vector</direct>
    <ptvctinf>
      <sdtsterm>
        <sdtstype>G-polygon</sdtstype>
        <ptvctcnt>562</ptvctcnt>
      </sdtsterm>
    </ptvctinf>
  </spdoinfo>
  <spref>
    <horizsys>
      <planar>
        <gridsys>
          <gridsysn>Universal Transverse Mercator</gridsysn>
          <utm>
            <utmzone>15</utmzone>
            <transmer>
              <sfctrmer>0.9996</sfctrmer>
              <longcm>-93.0</longcm>
              <latprjo>0.0</latprjo>
              <feast>500000.0</feast>
              <fnorth>0.0</fnorth>
            </transmer>
          </utm>
        </gridsys>
        <planci>
          <plance>coordinate pair</plance>
          <coordrep>
            <absres>0.6096</absres>
            <ordres>0.6096</ordres>
          </coordrep>
          <plandu>meters</plandu>
        </planci>
      </planar>
      <geodetic>
        <horizdn>North_American_Datum_1983</horizdn>
        <ellips>GRS_1980</ellips>
        <semiaxis>6378137.0</semiaxis>
        <denflat>298.257222101</denflat>
      </geodetic>
    </horizsys>
  </spref>
  <eainfo>
    <detailed>
      <enttyp>
        <enttypl>BinaryReaches.shp Attribute Table</enttypl>
        <enttypd>Table containing attribute information associated with the data set.</enttypd>
        <enttypds>Producer Defined</enttypds>
      </enttyp>
      <attr>
        <attrlabl>FID</attrlabl>
        <attrdef>Internal feature number.</attrdef>
        <attrdefs>ESRI</attrdefs>
        <attrdomv>
          <udom>Sequential unique whole numbers that are automatically generated.</udom>
        </attrdomv>
      </attr>
      <attr>
        <attrlabl>Shape</attrlabl>
        <attrdef>Feature geometry.</attrdef>
        <attrdefs>ESRI</attrdefs>
        <attrdomv>
          <udom>Coordinates defining the features.</udom>
        </attrdomv>
      </attr>
      <attr>
        <attrlabl>ID</attrlabl>
        <attrdef>NA</attrdef>
        <attrdefs>Producer Defined</attrdefs>
        <attrdomv>
          <rdom>
            <rdommin>0</rdommin>
            <rdommax>2448</rdommax>
          </rdom>
        </attrdomv>
      </attr>
      <attr>
        <attrlabl>GRIDCODE</attrlabl>
        <attrdef>Suitable or Unsuitable</attrdef>
        <attrdefs>Producer Defined</attrdefs>
        <attrdomv>
          <edom>
            <edomv>1</edomv>
            <edomvd>Suitable</edomvd>
            <edomvds>Producer defined</edomvds>
          </edom>
        </attrdomv>
        <attrdomv>
          <edom>
            <edomv>0</edomv>
            <edomvd>Unsuitable</edomvd>
            <edomvds>Producer defined</edomvds>
          </edom>
        </attrdomv>
      </attr>
      <attr>
        <attrlabl>SID</attrlabl>
        <attrdef>NA</attrdef>
        <attrdefs>Producer Defined</attrdefs>
        <attrdomv>
          <rdom>
            <rdommin>0</rdommin>
            <rdommax>288</rdommax>
          </rdom>
        </attrdomv>
      </attr>
      <attr>
        <attrlabl>USID</attrlabl>
        <attrdef>NA</attrdef>
        <attrdefs>Producer Defined</attrdefs>
        <attrdomv>
          <rdom>
            <rdommin>0</rdommin>
            <rdommax>292</rdommax>
          </rdom>
        </attrdomv>
      </attr>
      <attr>
        <attrlabl>RID</attrlabl>
        <attrdef>NA</attrdef>
        <attrdefs>Producer Defined</attrdefs>
        <attrdomv>
          <rdom>
            <rdommin>1</rdommin>
            <rdommax>580</rdommax>
          </rdom>
        </attrdomv>
      </attr>
      <attr>
        <attrlabl>River</attrlabl>
        <attrdef>Stream Name</attrdef>
        <attrdefs>Producer Defined</attrdefs>
        <attrdomv>
          <edom>
            <edomv>LowBourb</edomv>
            <edomvd>Lower Bourbeuse River</edomvd>
            <edomvds>Producer defined</edomvds>
          </edom>
        </attrdomv>
        <attrdomv>
          <edom>
            <edomv>UpBourb</edomv>
            <edomvd>Upper Bourbeuse River</edomvd>
            <edomvds>Producer defined</edomvds>
          </edom>
        </attrdomv>
        <attrdomv>
          <edom>
            <edomv>LowBig</edomv>
            <edomvd>Lower Big River</edomvd>
            <edomvds>Producer defined</edomvds>
          </edom>
        </attrdomv>
        <attrdomv>
          <edom>
            <edomv>UpBig</edomv>
            <edomvd>Upper Big River</edomvd>
            <edomvds>Producer defined</edomvds>
          </edom>
        </attrdomv>
        <attrdomv>
          <edom>
            <edomv>UpMera</edomv>
            <edomvd>Upper Meramec River</edomvd>
            <edomvds>Producer defined</edomvds>
          </edom>
        </attrdomv>
        <attrdomv>
          <edom>
            <edomv>LowMera</edomv>
            <edomvd>Lower Meramec River</edomvd>
            <edomvds>Producer defined</edomvds>
          </edom>
        </attrdomv>
        <attrdomv>
          <edom>
            <edomv>MidMera</edomv>
            <edomvd>Middle Meramec River</edomvd>
            <edomvds>Producer defined</edomvds>
          </edom>
        </attrdomv>
      </attr>
      <attr>
        <attrlabl>Length</attrlabl>
        <attrdef>Stream reach length in meters</attrdef>
        <attrdefs>Producer Defined</attrdefs>
        <attrdomv>
          <rdom>
            <rdommin>12.399</rdommin>
            <rdommax>9109.837</rdommax>
            <attrunit>m</attrunit>
          </rdom>
        </attrdomv>
      </attr>
    </detailed>
    <overview>
      <eaover>The "FID" column contains automatically generated numbers that represent individual stream reaches. The "Shape" column denotes that the dataset is in vector format. The "GRIDCODE" column identifies suitable and unsuitable habitat predicted by the model (1= suitable, 0=unsuitable). The "River" column identifies the stream name and section (LowBourb= lower Bourbeuse River, UpBourb= upper Bourbeuse River, LowBig= lower Big River, UpBig= upper Big River, MidMera= middle Meramec River, LowMera= lower Meramec River. The "Length" column represents the length (in meters) of each suitable and unsuitable stream reach.</eaover>
      <eadetcit>Key, K. N. 2019. A spatial assessment of the status and risks to mussel concentrations in the Meramec Drainage of Missouri. PhD Dissertation, Tennessee Technological University, Cookeville, Tennessee</eadetcit>
    </overview>
  </eainfo>
  <distinfo>
    <distrib>
      <cntinfo>
        <cntorgp>
          <cntorg>U.S. Geological Survey</cntorg>
          <cntper>GS ScienceBase</cntper>
        </cntorgp>
        <cntaddr>
          <addrtype>mailing address</addrtype>
          <address>Denver Federal Center, Building 810, Mail Stop 302</address>
          <city>Denver</city>
          <state>CO</state>
          <postal>80225</postal>
          <country>United States</country>
        </cntaddr>
        <cntvoice>1-888-275-8747</cntvoice>
        <cntemail>sciencebase@usgs.gov</cntemail>
      </cntinfo>
    </distrib>
    <distliab>Unless otherwise stated, all data, metadata and related materials are considered to satisfy the quality standards relative to the purpose for which the data were collected. Although these data and associated metadata have been reviewed for accuracy and completeness and approved for release by the U.S. Geological Survey (USGS), no warranty expressed or implied is made regarding the display or utility of the data on any other system or for general or scientific purposes, nor shall the act of distribution constitute any such warranty.</distliab>
    <stdorder>
      <digform>
        <digtinfo>
          <formname>Digital Data</formname>
        </digtinfo>
        <digtopt>
          <onlinopt>
            <computer>
              <networka>
                <networkr>https://doi.org/10.5066/P9MDNT7P</networkr>
              </networka>
            </computer>
          </onlinopt>
        </digtopt>
      </digform>
      <fees>None</fees>
    </stdorder>
  </distinfo>
  <metainfo>
    <metd>20240509</metd>
    <metc>
      <cntinfo>
        <cntperp>
          <cntper>Kayla N. Key</cntper>
          <cntorg>West Tennessee River Basin Authority</cntorg>
        </cntperp>
        <cntpos>Environmental Consultant I</cntpos>
        <cntaddr>
          <addrtype>mailing and physical</addrtype>
          <address>3628 East End Drive</address>
          <city>Humboldt</city>
          <state>Tennessee</state>
          <postal>38343</postal>
        </cntaddr>
        <cntvoice>7316164557</cntvoice>
        <cntemail>Kayla.Key@tn.gov</cntemail>
      </cntinfo>
    </metc>
    <metstdn>FGDC Content Standard for Digital Geospatial Metadata</metstdn>
    <metstdv>FGDC-STD-001-1998</metstdv>
  </metainfo>
</metadata>
